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- /* -------------------------------------------------------------------------- *
- * Lepton *
- * -------------------------------------------------------------------------- *
- * This is part of the Lepton expression parser originating from *
- * Simbios, the NIH National Center for Physics-Based Simulation of *
- * Biological Structures at Stanford, funded under the NIH Roadmap for *
- * Medical Research, grant U54 GM072970. See https://simtk.org. *
- * *
- * Portions copyright (c) 2013 Stanford University and the Authors. *
- * Authors: Peter Eastman *
- * Contributors: *
- * *
- * Permission is hereby granted, free of charge, to any person obtaining a *
- * copy of this software and associated documentation files (the "Software"), *
- * to deal in the Software without restriction, including without limitation *
- * the rights to use, copy, modify, merge, publish, distribute, sublicense, *
- * and/or sell copies of the Software, and to permit persons to whom the *
- * Software is furnished to do so, subject to the following conditions: *
- * *
- * The above copyright notice and this permission notice shall be included in *
- * all copies or substantial portions of the Software. *
- * *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
- * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
- * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
- * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
- * USE OR OTHER DEALINGS IN THE SOFTWARE. *
- * -------------------------------------------------------------------------- */
-
- #include "CompiledExpression.h"
- #include "Operation.h"
- #include "ParsedExpression.h"
- #include <utility>
- #include <cstdint>
-
- using namespace Lepton;
-
- CompiledExpression::CompiledExpression(const ParsedExpression& expression)
- {
- ParsedExpression expr = expression.optimize(); // Just in case it wasn't already optimized.
- std::vector<std::pair<ExpressionTreeNode, int>> temps;
- compileExpression(expr.getRootNode(), temps);
- }
-
- CompiledExpression& CompiledExpression::operator=(const CompiledExpression& expression)
- {
- arguments = expression.arguments;
- target = expression.target;
- variableIndices = expression.variableIndices;
- variableNames = expression.variableNames;
- workspace.resize(expression.workspace.size());
- argValues.resize(expression.argValues.size());
- operation.resize(expression.operation.size());
- for (size_t i = 0; i < operation.size(); ++i) { operation[i] = expression.operation[i]->clone(); }
- return *this;
- }
-
- void CompiledExpression::compileExpression(const ExpressionTreeNode& node, std::vector<std::pair<ExpressionTreeNode, int>>& temps)
- {
- if (findTempIndex(node, temps) != -1) { return; } // We have already processed a node identical to this one.
-
- // Process the child nodes.
-
- std::vector<int> args;
- for (size_t i = 0; i < node.getChildren().size(); ++i)
- {
- compileExpression(node.getChildren()[i], temps);
- args.push_back(findTempIndex(node.getChildren()[i], temps));
- }
-
- // Process this node.
-
- if (node.getOperation().getId() == Operation::VARIABLE)
- {
- variableIndices[node.getOperation().getName()] = int(workspace.size());
- variableNames.insert(node.getOperation().getName());
- }
- else
- {
- int stepIndex = int(arguments.size());
- arguments.push_back(std::vector<int>());
- target.push_back(int(workspace.size()));
- operation.push_back(node.getOperation().clone());
- if (args.size() == 0) arguments[stepIndex].push_back(0); // The value won't actually be used. We just need something there.
- else
- {
- // If the arguments are sequential, we can just pass a pointer to the first one.
-
- bool sequential = true;
- for (size_t i = 1; i < args.size(); ++i) if (args[i] != args[i - 1] + 1) sequential = false;
- if (sequential) arguments[stepIndex].push_back(args[0]);
- else
- {
- arguments[stepIndex] = args;
- if (args.size() > argValues.size()) argValues.resize(args.size(), 0.0);
- }
- }
- }
- temps.push_back(std::make_pair(node, workspace.size()));
- workspace.push_back(0.0);
- }
-
- int CompiledExpression::findTempIndex(const ExpressionTreeNode& node, std::vector<std::pair<ExpressionTreeNode, int>>& temps)
- {
- for (size_t i = 0; i < temps.size(); ++i) { if (temps[i].first == node) { return int(i); } }
- return -1;
- }
-
- double& CompiledExpression::getVariableReference(const std::string& name)
- {
- auto index = variableIndices.find(name);
- if (index == variableIndices.end()) throw Exception("getVariableReference: Unknown variable '" + name + "'");
- return workspace[index->second];
- }
-
- double CompiledExpression::evaluate() const
- {
- // Loop over the operations and evaluate each one.
-
- for (size_t step = 0; step < operation.size(); ++step)
- {
- const std::vector<int>& args = arguments[step];
- if (args.size() == 1) workspace[target[step]] = operation[step]->evaluate(&workspace[args[0]], dummyVariables);
- else
- {
- for (size_t i = 0; i < args.size(); ++i) argValues[i] = workspace[args[i]];
- workspace[target[step]] = operation[step]->evaluate(&argValues[0], dummyVariables);
- }
- }
- return workspace[workspace.size() - 1];
- }
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