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added doc folder for documentation with latex

newsletter
Esther Kleinhenz 6 years ago
parent
84ea0b4d08
commit
f31119ce27
15 changed files with 1468 additions and 0 deletions
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  1. 11
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      doc/graduate-thesis/Appendices/AppendixA.tex
  2. 40
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      doc/graduate-thesis/Bibliography.bib
  3. 17
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      doc/graduate-thesis/Chapters/Chapter1.tex
  4. 55
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      doc/graduate-thesis/Thesis.aux
  5. 380
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      doc/graduate-thesis/Thesis.cls
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      doc/graduate-thesis/Thesis.lot
  9. 13
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      doc/graduate-thesis/Thesis.out
  10. BIN
      doc/graduate-thesis/Thesis.pdf
  11. BIN
      doc/graduate-thesis/Thesis.synctex.gz
  12. 217
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      doc/graduate-thesis/Thesis.tex
  13. 19
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      doc/graduate-thesis/Thesis.toc
  14. 1
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  15. 1
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doc/graduate-thesis/Appendices/AppendixA.tex View File

\chapter{An Appendix}

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Vivamus at pulvinar nisi. Phasellus hendrerit, diam placerat interdum iaculis, mauris justo cursus risus, in viverra purus eros at ligula. Ut metus justo, consequat a tristique posuere, laoreet nec nibh. Etiam et scelerisque mauris. Phasellus vel massa magna. Ut non neque id tortor pharetra bibendum vitae sit amet nisi. Duis nec quam quam, sed euismod justo. Pellentesque eu tellus vitae ante tempus malesuada. Nunc accumsan, quam in congue consequat, lectus lectus dapibus erat, id aliquet urna neque at massa. Nulla facilisi. Morbi ullamcorper eleifend posuere. Donec libero leo, faucibus nec bibendum at, mattis et urna. Proin consectetur, nunc ut imperdiet lobortis, magna neque tincidunt lectus, id iaculis nisi justo id nibh. Pellentesque vel sem in erat vulputate faucibus molestie ut lorem.

Quisque tristique urna in lorem laoreet at laoreet quam congue. Donec dolor turpis, blandit non imperdiet aliquet, blandit et felis. In lorem nisi, pretium sit amet vestibulum sed, tempus et sem. Proin non ante turpis. Nulla imperdiet fringilla convallis. Vivamus vel bibendum nisl. Pellentesque justo lectus, molestie vel luctus sed, lobortis in libero. Nulla facilisi. Aliquam erat volutpat. Suspendisse vitae nunc nunc. Sed aliquet est suscipit sapien rhoncus non adipiscing nibh consequat. Aliquam metus urna, faucibus eu vulputate non, luctus eu justo.

Donec urna leo, vulputate vitae porta eu, vehicula blandit libero. Phasellus eget massa et leo condimentum mollis. Nullam molestie, justo at pellentesque vulputate, sapien velit ornare diam, nec gravida lacus augue non diam. Integer mattis lacus id libero ultrices sit amet mollis neque molestie. Integer ut leo eget mi volutpat congue. Vivamus sodales, turpis id venenatis placerat, tellus purus adipiscing magna, eu aliquam nibh dolor id nibh. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Sed cursus convallis quam nec vehicula. Sed vulputate neque eget odio fringilla ac sodales urna feugiat.

Phasellus nisi quam, volutpat non ullamcorper eget, congue fringilla leo. Cras et erat et nibh placerat commodo id ornare est. Nulla facilisi. Aenean pulvinar scelerisque eros eget interdum. Nunc pulvinar magna ut felis varius in hendrerit dolor accumsan. Nunc pellentesque magna quis magna bibendum non laoreet erat tincidunt. Nulla facilisi.

Duis eget massa sem, gravida interdum ipsum. Nulla nunc nisl, hendrerit sit amet commodo vel, varius id tellus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nunc ac dolor est. Suspendisse ultrices tincidunt metus eget accumsan. Nullam facilisis, justo vitae convallis sollicitudin, eros augue malesuada metus, nec sagittis diam nibh ut sapien. Duis blandit lectus vitae lorem aliquam nec euismod nisi volutpat. Vestibulum ornare dictum tortor, at faucibus justo tempor non. Nulla facilisi. Cras non massa nunc, eget euismod purus. Nunc metus ipsum, euismod a consectetur vel, hendrerit nec nunc.

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doc/graduate-thesis/Bibliography.bib View File

@article{Reference1,
Abstract = {We have developed an enhanced Littrow configuration extended cavity diode laser (ECDL) that can be tuned without changing the direction of the output beam. The output of a conventional Littrow ECDL is reflected from a plane mirror fixed parallel to the tuning diffraction grating. Using a free-space Michelson wavemeter to measure the laser wavelength, we can tune the laser over a range greater than 10 nm without any alteration of alignment.},
Author = {C. J. Hawthorn and K. P. Weber and R. E. Scholten},
Journal = {Review of Scientific Instruments},
Month = {December},
Number = {12},
Numpages = {3},
Pages = {4477--4479},
Title = {Littrow Configuration Tunable External Cavity Diode Laser with Fixed Direction Output Beam},
Volume = {72},
Url = {http://link.aip.org/link/?RSI/72/4477/1},
Year = {2001}}

@article{Reference3,
Abstract = {Operating a laser diode in an extended cavity which provides frequency-selective feedback is a very effective method of reducing the laser's linewidth and improving its tunability. We have developed an extremely simple laser of this type, built from inexpensive commercial components with only a few minor modifications. A 780~nm laser built to this design has an output power of 80~mW, a linewidth of 350~kHz, and it has been continuously locked to a Doppler-free rubidium transition for several days.},
Author = {A. S. Arnold and J. S. Wilson and M. G. Boshier},
Journal = {Review of Scientific Instruments},
Month = {March},
Number = {3},
Numpages = {4},
Pages = {1236--1239},
Title = {A Simple Extended-Cavity Diode Laser},
Volume = {69},
Url = {http://link.aip.org/link/?RSI/69/1236/1},
Year = {1998}}

@article{Reference2,
Abstract = {We present a review of the use of diode lasers in atomic physics with an extensive list of references. We discuss the relevant characteristics of diode lasers and explain how to purchase and use them. We also review the various techniques that have been used to control and narrow the spectral outputs of diode lasers. Finally we present a number of examples illustrating the use of diode lasers in atomic physics experiments. Review of Scientific Instruments is copyrighted by The American Institute of Physics.},
Author = {Carl E. Wieman and Leo Hollberg},
Journal = {Review of Scientific Instruments},
Keywords = {Diode Laser},
Month = {January},
Number = {1},
Numpages = {20},
Pages = {1--20},
Title = {Using Diode Lasers for Atomic Physics},
Volume = {62},
Url = {http://link.aip.org/link/?RSI/62/1/1},
Year = {1991}}


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doc/graduate-thesis/Chapters/Chapter1.tex View File

\chapter{Introduction}

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Vivamus at pulvinar nisi. Phasellus hendrerit, diam placerat interdum iaculis, mauris justo cursus risus, in viverra purus eros at ligula. Ut metus justo, consequat a tristique posuere, laoreet nec nibh. Etiam et scelerisque mauris. Phasellus vel massa magna. Ut non neque id tortor pharetra bibendum vitae sit amet nisi. Duis nec quam quam, sed euismod justo. Pellentesque eu tellus vitae ante tempus malesuada. Nunc accumsan, quam in congue consequat, lectus lectus dapibus erat, id aliquet urna neque at massa. Nulla facilisi. Morbi ullamcorper eleifend posuere. Donec libero leo, faucibus nec bibendum at, mattis et urna. Proin consectetur, nunc ut imperdiet lobortis, magna neque tincidunt lectus, id iaculis nisi justo id nibh. Pellentesque vel sem in erat vulputate faucibus molestie ut lorem.

\section{A Section}

Quisque tristique urna in lorem laoreet at laoreet quam congue. Donec dolor turpis, blandit non imperdiet aliquet, blandit et felis. In lorem nisi, pretium sit amet vestibulum sed, tempus et sem. Proin non ante turpis. Nulla imperdiet fringilla convallis. Vivamus vel bibendum nisl. Pellentesque justo lectus, molestie vel luctus sed, lobortis in libero. Nulla facilisi. Aliquam erat volutpat. Suspendisse vitae nunc nunc. Sed aliquet est suscipit sapien rhoncus non adipiscing nibh consequat. Aliquam metus urna, faucibus eu vulputate non, luctus eu justo.

\subsection{A Subsection}

Donec urna leo, vulputate vitae porta eu, vehicula blandit libero. Phasellus eget massa et leo condimentum mollis. Nullam molestie, justo at pellentesque vulputate, sapien velit ornare diam, nec gravida lacus augue non diam. Integer mattis lacus id libero ultrices sit amet mollis neque molestie. Integer ut leo eget mi volutpat congue. Vivamus sodales, turpis id venenatis placerat, tellus purus adipiscing magna, eu aliquam nibh dolor id nibh. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Sed cursus convallis quam nec vehicula. Sed vulputate neque eget odio fringilla ac sodales urna feugiat.

\section{Another Section}

Phasellus nisi quam, volutpat non ullamcorper eget, congue fringilla leo. Cras et erat et nibh placerat commodo id ornare est. Nulla facilisi. Aenean pulvinar scelerisque eros eget interdum. Nunc pulvinar magna ut felis varius in hendrerit dolor accumsan. Nunc pellentesque magna quis magna bibendum non laoreet erat tincidunt. Nulla facilisi.

Duis eget massa sem, gravida interdum ipsum. Nulla nunc nisl, hendrerit sit amet commodo vel, varius id tellus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nunc ac dolor est. Suspendisse ultrices tincidunt metus eget accumsan. Nullam facilisis, justo vitae convallis sollicitudin, eros augue malesuada metus, nec sagittis diam nibh ut sapien. Duis blandit lectus vitae lorem aliquam nec euismod nisi volutpat. Vestibulum ornare dictum tortor, at faucibus justo tempor non. Nulla facilisi. Cras non massa nunc, eget euismod purus. Nunc metus ipsum, euismod a consectetur vel, hendrerit nec nunc.

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doc/graduate-thesis/Thesis.aux View File

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doc/graduate-thesis/Thesis.cls View File

%%
%% This is file `Thesis.cls', based on 'ECSthesis.cls', by Steve R. Gunn
%% generated with the docstrip utility.
%%
%% Created by Steve R. Gunn, modified by Sunil Patel: www.sunilpatel.co.uk

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Title Page
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Declaration of Authorship
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Abstract Page
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Acknowledgements
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Table of Contents
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List of Figures
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List of Tables
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Abbreviations
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Physical Constants
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Symbols
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Dedicatory
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Chapter 1.
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1 Introduction
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Appendix A.
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A An Appendix
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Bibliography
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%% ----------------------------------------------------------------
%% Thesis.tex -- MAIN FILE (the one that you compile with LaTeX)
%% ----------------------------------------------------------------

% Set up the document
\documentclass[a4paper, 11pt, oneside]{Thesis} % Use the "Thesis" style, based on the ECS Thesis style by Steve Gunn
\graphicspath{Figures/} % Location of the graphics files (set up for graphics to be in PDF format)

% Include any extra LaTeX packages required
\usepackage[square, numbers, comma, sort&compress]{natbib} % Use the "Natbib" style for the references in the Bibliography
\usepackage{verbatim} % Needed for the "comment" environment to make LaTeX comments
\usepackage{vector} % Allows "\bvec{}" and "\buvec{}" for "blackboard" style bold vectors in maths
\hypersetup{urlcolor=blue, colorlinks=true} % Colours hyperlinks in blue, but this can be distracting if there are many links.

%% ----------------------------------------------------------------
\begin{document}
\frontmatter % Begin Roman style (i, ii, iii, iv...) page numbering

% Set up the Title Page
\title {Thesis Title}
\authors {\texorpdfstring
{\href{your web site or email address}{Author Name}}
{Author Name}
}
\addresses {\groupname\\\deptname\\\univname} % Do not change this here, instead these must be set in the "Thesis.cls" file, please look through it instead
\date {\today}
\subject {}
\keywords {}

\maketitle
%% ----------------------------------------------------------------

\setstretch{1.3} % It is better to have smaller font and larger line spacing than the other way round

% Define the page headers using the FancyHdr package and set up for one-sided printing
\fancyhead{} % Clears all page headers and footers
\rhead{\thepage} % Sets the right side header to show the page number
\lhead{} % Clears the left side page header

\pagestyle{fancy} % Finally, use the "fancy" page style to implement the FancyHdr headers

%% ----------------------------------------------------------------
% Declaration Page required for the Thesis, your institution may give you a different text to place here
\Declaration{

\addtocontents{toc}{\vspace{1em}} % Add a gap in the Contents, for aesthetics

I, AUTHOR NAME, declare that this thesis titled, `THESIS TITLE' and the work presented in it are my own. I confirm that:

\begin{itemize}
\item[\tiny{$\blacksquare$}] This work was done wholly or mainly while in candidature for a research degree at this University.
\item[\tiny{$\blacksquare$}] Where any part of this thesis has previously been submitted for a degree or any other qualification at this University or any other institution, this has been clearly stated.
\item[\tiny{$\blacksquare$}] Where I have consulted the published work of others, this is always clearly attributed.
\item[\tiny{$\blacksquare$}] Where I have quoted from the work of others, the source is always given. With the exception of such quotations, this thesis is entirely my own work.
\item[\tiny{$\blacksquare$}] I have acknowledged all main sources of help.
\item[\tiny{$\blacksquare$}] Where the thesis is based on work done by myself jointly with others, I have made clear exactly what was done by others and what I have contributed myself.
\\
\end{itemize}
Signed:\\
\rule[1em]{25em}{0.5pt} % This prints a line for the signature
Date:\\
\rule[1em]{25em}{0.5pt} % This prints a line to write the date
}
\clearpage % Declaration ended, now start a new page

%% ----------------------------------------------------------------
% The "Funny Quote Page"
\pagestyle{empty} % No headers or footers for the following pages

\null\vfill
% Now comes the "Funny Quote", written in italics
\textit{``Write a funny quote here.''}

\begin{flushright}
If the quote is taken from someone, their name goes here
\end{flushright}

\vfill\vfill\vfill\vfill\vfill\vfill\null
\clearpage % Funny Quote page ended, start a new page
%% ----------------------------------------------------------------

% The Abstract Page
\addtotoc{Abstract} % Add the "Abstract" page entry to the Contents
\abstract{
\addtocontents{toc}{\vspace{1em}} % Add a gap in the Contents, for aesthetics

The Thesis Abstract is written here (and usually kept to just this page). The page is kept centered vertically so can expand into the blank space above the title too\ldots

}

\clearpage % Abstract ended, start a new page
%% ----------------------------------------------------------------

\setstretch{1.3} % Reset the line-spacing to 1.3 for body text (if it has changed)

% The Acknowledgements page, for thanking everyone
\acknowledgements{
\addtocontents{toc}{\vspace{1em}} % Add a gap in the Contents, for aesthetics

The acknowledgements and the people to thank go here, don't forget to include your project advisor\ldots

}
\clearpage % End of the Acknowledgements
%% ----------------------------------------------------------------

\pagestyle{fancy} %The page style headers have been "empty" all this time, now use the "fancy" headers as defined before to bring them back


%% ----------------------------------------------------------------
\lhead{\emph{Contents}} % Set the left side page header to "Contents"
\tableofcontents % Write out the Table of Contents

%% ----------------------------------------------------------------
\lhead{\emph{List of Figures}} % Set the left side page header to "List if Figures"
\listoffigures % Write out the List of Figures

%% ----------------------------------------------------------------
\lhead{\emph{List of Tables}} % Set the left side page header to "List of Tables"
\listoftables % Write out the List of Tables

%% ----------------------------------------------------------------
\setstretch{1.5} % Set the line spacing to 1.5, this makes the following tables easier to read
\clearpage % Start a new page
\lhead{\emph{Abbreviations}} % Set the left side page header to "Abbreviations"
\listofsymbols{ll} % Include a list of Abbreviations (a table of two columns)
{
% \textbf{Acronym} & \textbf{W}hat (it) \textbf{S}tands \textbf{F}or \\
\textbf{LAH} & \textbf{L}ist \textbf{A}bbreviations \textbf{H}ere \\

}

%% ----------------------------------------------------------------
\clearpage % Start a new page
\lhead{\emph{Physical Constants}} % Set the left side page header to "Physical Constants"
\listofconstants{lrcl} % Include a list of Physical Constants (a four column table)
{
% Constant Name & Symbol & = & Constant Value (with units) \\
Speed of Light & $c$ & $=$ & $2.997\ 924\ 58\times10^{8}\ \mbox{ms}^{-\mbox{s}}$ (exact)\\

}

%% ----------------------------------------------------------------
\clearpage %Start a new page
\lhead{\emph{Symbols}} % Set the left side page header to "Symbols"
\listofnomenclature{lll} % Include a list of Symbols (a three column table)
{
% symbol & name & unit \\
$a$ & distance & m \\
$P$ & power & W (Js$^{-1}$) \\
& & \\ % Gap to separate the Roman symbols from the Greek
$\omega$ & angular frequency & rads$^{-1}$ \\
}
%% ----------------------------------------------------------------
% End of the pre-able, contents and lists of things
% Begin the Dedication page

\setstretch{1.3} % Return the line spacing back to 1.3

\pagestyle{empty} % Page style needs to be empty for this page
\dedicatory{For/Dedicated to/To my\ldots}

\addtocontents{toc}{\vspace{2em}} % Add a gap in the Contents, for aesthetics


%% ----------------------------------------------------------------
\mainmatter % Begin normal, numeric (1,2,3...) page numbering
\pagestyle{fancy} % Return the page headers back to the "fancy" style

% Include the chapters of the thesis, as separate files
% Just uncomment the lines as you write the chapters

\input{Chapters/Chapter1} % Introduction

%\input{Chapters/Chapter2} % Background Theory

%\input{Chapters/Chapter3} % Experimental Setup

%\input{Chapters/Chapter4} % Experiment 1

%\input{Chapters/Chapter5} % Experiment 2

%\input{Chapters/Chapter6} % Results and Discussion

%\input{Chapters/Chapter7} % Conclusion

%% ----------------------------------------------------------------
% Now begin the Appendices, including them as separate files

\addtocontents{toc}{\vspace{2em}} % Add a gap in the Contents, for aesthetics

\appendix % Cue to tell LaTeX that the following 'chapters' are Appendices

\input{Appendices/AppendixA} % Appendix Title

%\input{Appendices/AppendixB} % Appendix Title

%\input{Appendices/AppendixC} % Appendix Title

\addtocontents{toc}{\vspace{2em}} % Add a gap in the Contents, for aesthetics
\backmatter

%% ----------------------------------------------------------------
\label{Bibliography}
\lhead{\emph{Bibliography}} % Change the left side page header to "Bibliography"
\bibliographystyle{unsrtnat} % Use the "unsrtnat" BibTeX style for formatting the Bibliography
\bibliography{Bibliography} % The references (bibliography) information are stored in the file named "Bibliography.bib"

\end{document} % The End
%% ----------------------------------------------------------------

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\contentsline {chapter}{Declaration of Authorship}{i}{dummy.1}
\vspace {1em}
\contentsline {chapter}{Abstract}{iii}{dummy.2}
\vspace {1em}
\contentsline {chapter}{Acknowledgements}{iv}{dummy.3}
\vspace {1em}
\contentsline {chapter}{List of Figures}{vi}{dummy.5}
\contentsline {chapter}{List of Tables}{vii}{dummy.7}
\contentsline {chapter}{Abbreviations}{viii}{dummy.9}
\contentsline {chapter}{Physical Constants}{ix}{dummy.12}
\contentsline {chapter}{Symbols}{x}{dummy.15}
\vspace {2em}
\contentsline {chapter}{\numberline {1}Introduction}{1}{chapter.18}
\contentsline {section}{\numberline {1.1}A Section}{1}{section.19}
\contentsline {subsection}{\numberline {1.1.1}A Subsection}{1}{subsection.20}
\contentsline {section}{\numberline {1.2}Another Section}{2}{section.21}
\vspace {2em}
\contentsline {chapter}{\numberline {A}An Appendix}{3}{appendix.22}
\vspace {2em}

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%%%% This is file `vector.sty',%% generated with the docstrip utility.%%%% The original source files were:%%%% vector.dtx (with options: `package')%% %% Copyright (C) 1994 by Nick Efford%% %% This file is distributed in the hope that it will be useful,%% but WITHOUT ANY WARRANTY; without even the implied warranty of%% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.%% \NeedsTeXFormat{LaTeX2e}\ProvidesPackage{vector}[1994/09/16 v1.0 vector macros for LaTeX2e (nde)]\RequirePackage{ifthen}\RequirePackage{calc}\newboolean{@wavy}\DeclareOption{wavy}{\setboolean{@wavy}{true}}\ProcessOptions\newcommand{\bvec}[1]{\ensuremath{\mathbf{#1}}}\newcommand{\buvec}[1]{\ensuremath{\mathbf{\hat{#1}}}}\newcommand{\svec}[1]{\ensuremath{\mathsf{#1}}}\newcommand{\suvec}[1]{\ensuremath{\mathsf{\hat{#1}}}}\ifthenelse{\boolean{@wavy}}{% \PackageInfo{vector}{wavy underlining selected} \newcommand{\undertilde}[1]{\mathord{\vtop{\ialign{##\crcr $\hfil\displaystyle{#1}\hfil$\crcr\noalign{\kern1.5pt\nointerlineskip} $\hfil\tilde{}\hfil$\crcr\noalign{\kern1.5pt}}}}} \newcommand{\uvec}[1]{\ensuremath{\undertilde{#1}}} \newcommand{\uuvec}[1]{\ensuremath{\hat{\undertilde{#1}}}}}{% \newcommand{\uvec}[1]{\ensuremath{\underline{#1}}} \newcommand{\uuvec}[1]{\ensuremath{\hat{\underline{#1}}}}}\def\first@element{1}\newcommand{\firstelement}[1]{\def\first@element{#1}}\newcommand{\irvec}[2][n]{\ensuremath{{#2}_{\first@element},\ldots,{#2}_{#1}}}\newcommand{\icvec}[2][n]{% \begin{array}{c} {#2}_{\first@element}\\ \vdots\\ {#2}_{#1} \end{array}}\newcounter{vec@elem}\newcommand{\rvec}[3]{% \ensuremath{% \ifthenelse{#3 > #2}{% \setcounter{vec@elem}{#2} \whiledo{\value{vec@elem} < #3}% {{#1}_{\thevec@elem}, \stepcounter{vec@elem}}% {#1}_{#3}}{{#1}_{#2}}}}\newcommand{\cvec}[3]{% \ifthenelse{#3 > #2}{% \setcounter{vec@elem}{#2} \begin{array}{c} \whiledo{\value{vec@elem} < #3}% {{#1}_{\thevec@elem} \\ \stepcounter{vec@elem}}% {#1}_{#3} \end{array}}{{#1}_{#2}}}\endinput%%%% End of file `vector.sty'.

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