{ "cells": [ { "cell_type": "code", "execution_count": null, "id": "aab6b326-a583-47ad-8bb7-723c2fddcc63", "metadata": { "scrolled": true }, "outputs": [], "source": [ "%pip install pyocclient\n", "import yaml\n", "import owncloud\n", "import pandas as pd\n", "import time" ] }, { "cell_type": "code", "execution_count": null, "id": "4f42846c-27c3-4394-a40a-e22d73c2902e", "metadata": {}, "outputs": [], "source": [ "start = time.time()\n", "\n", "with open(\"login.yaml\") as f:\n", " cfg = yaml.safe_load(f)\n", "url, password = cfg[0][\"url\"], cfg[1][\"password\"]\n", "file = \"adabase-public-0003-v_0_0_2.h5py\"\n", "oc = owncloud.Client.from_public_link(url, folder_password=password)\n", "\n", "\n", "oc.get_file(file, \"tmp.h5\")\n", "\n", "end = time.time()\n", "print(end - start)\n" ] }, { "cell_type": "code", "execution_count": null, "id": "3714dec2-85d0-4f76-af46-ea45ebec2fa3", "metadata": {}, "outputs": [], "source": [ "start = time.time()\n", "df_performance = pd.read_hdf(\"tmp.h5\", \"PERFORMANCE\")\n", "end = time.time()\n", "print(end - start)" ] }, { "cell_type": "code", "execution_count": null, "id": "6ae47e52-ad86-4f8d-b929-0080dc99f646", "metadata": {}, "outputs": [], "source": [ "start = time.time()\n", "df_4_col = pd.read_hdf(\"tmp.h5\", \"SIGNALS\", mode=\"r\", columns=[\"STUDY\",\"LEVEL\", \"PHASE\", 'RAW_ECG_I'])\n", "end = time.time()\n", "print(end - start)" ] }, { "cell_type": "code", "execution_count": null, "id": "7c139f3a-ede8-4530-957d-d1bb939f6cb5", "metadata": {}, "outputs": [], "source": [ "df_4_col.head()" ] }, { "cell_type": "code", "execution_count": null, "id": "a68d58ea-65f2-46c4-a2b2-8c3447c715d7", "metadata": {}, "outputs": [], "source": [ "df_4_col.shape" ] }, { "cell_type": "code", "execution_count": null, "id": "95aa4523-3784-4ab6-bf92-0227ce60e863", "metadata": {}, "outputs": [], "source": [ "df_4_col.info()" ] }, { "cell_type": "code", "execution_count": null, "id": "defbcaf4-ad1b-453f-9b48-ab0ecfc4b5d5", "metadata": {}, "outputs": [], "source": [ "df_4_col.isna().sum()" ] }, { "cell_type": "code", "execution_count": null, "id": "72313895-c478-44a5-9108-00b0bec01bb8", "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.12.10" } }, "nbformat": 4, "nbformat_minor": 5 }